Integrated fibre-specific methylome and proteome profiling of human skeletal muscle across males and females with fibre-type deconvolution
Andrew S. Palmer, Esther García-Domínguez, Megan F. Taylor, Andrew Garnham, Kirsten Seale, Joel R. Steele, Han-Chung Lee, Ralf B. Schittenhelm & Nir Eynon
Skeletal Muscle, 2025. https://doi.org/10.1186/s13395-025-00396-0

A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.
Teschendorff AE, Breeze CE, Zheng SC, Beck S.
BMC Bioinformatics, 2017. https://doi.org/10.1186/s12859-017-1511-5

ggplot2: Elegant Graphics for Data Analysis
Hadley Wickham
Springer-Verlag New York, 2016. https://ggplot2.tidyverse.org

gghalves: Compose Half-Half Plots Using Your Favourite Geoms
Frederik Tiedemann
R package version 0.1.4, 2022. https://CRAN.R-project.org/package=gghalves

ggbeeswarm: Categorical Scatter (Violin Point) Plots
Erik Clarke and Scott Sherrill-Mix and Charlotte Dawson
R package version 0.7.2, 2023. https://CRAN.R-project.org/package=ggbeeswarm

ggrepel: Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Kamil Slowikowski
R package version 0.9.6, 2024. https://CRAN.R-project.org/package=ggrepel

The OpenCPU System: Towards a Universal Interface for Scientific Computing through Separation of Concerns
Jeroen Ooms
arxiv, 2016. https://doi.org/10.48550/arXiv.1406.4806